A Bronx pastor charged with raping a 12-year-old girl from his flock turned down a “sweetheart” plea deal that came with three years in prison.

Michael Clare, 38, refused the offer from prosecutors, despite “almost irrefutable proof” he impregnated the child, said Bronx Supreme Court Justice Megan Tallmer.

“He wasn’t interested,” Tallmer said in court Monday.

Clare’s lawyer, Paul Brenner, asked the judge to consider probation instead of prison.

“I would never do that,” she snapped, citing a DNA match between Clare and the victim’s aborted fetus.

Clare – the married leader of the Harvest Worship Center and principal of the associated Harvest Prep school, declined comment outside court.

Authorities learned of the alleged crimes in June, when the girl, who now 15, told her parents and police that Clare had sexually preyed on her for three years. [Daily News]